All Faculty and Research Staff Publications

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Donnelly DP, Rawlins CM, DeHart CJ, Fornelli L, Schachner LF, Lin ZQ, Lippens JL, Aluri KC, Sarin R, Chen BF, et al. Best practices and benchmarks for intact protein analysis for top-down mass spectrometry. Nature Methods. 2019 ;16:587-594.
Spiniello M, Steinbrink MI, Cesnik AJ, Miller RM, Scalf M, Shortreed MR, Smith LM. Comprehensive in vivo identification of the c-Myc mRNA protein interactome using HyPR-MS. RNA. 2019 ;25:1337-1352.
Dai YX, Buxton KE, Schaffer LV, Miller RM, Millikin RJ, Scalf M, Frey BL, Shortreed MR, Smith LM. Constructing Human Proteoform Families Using Intact-Mass and Top-Down Proteomics with a Multi-Protease Global Post-Translational Modification Discovery Database. Journal of Proteome Research. 2019 ;18:3671-3680.
Ling CY, Nishimoto K, Rolfs Z, Smith LM, Frey BL, Welham NV. Differentiated fibrocytes assume a functional mesenchymal phenotype with regenerative potential. Science Advances. 2019 ;5.
Holden MT, Smith LM. Encrypted Oligonucleotide Arrays for Molecular Authentication. ACS Combinatorial Science. 2019 ;21:562-567.
Smith LM, Thomas PM, Shortreed MR, Schaffer LV, Fellers RT, Leduc RD, Tucholski T, Ge Y, Agar JN, Anderson LC, et al. A five-level classification system for proteoform identifications. Nature MethodsNat Methods. 2019 ;16:939-940.
Rolfs Z, Solntsev SK, Shortreed MR, Frey BL, Smith LM. Global Identification of Post-Translationally Spliced Peptides with Neo-Fusion. Journal of Proteome Research. 2019 ;18:349-358.
Mayer KS, Chen XS, Sanders D, Chen JN, Jiang JJ, Nguyen P, Scalf M, Smith LM, Zhong XH. HDA9-PWR-HOS15 Is a Core Histone Deacetylase Complex Regulating Transcription and Development. Plant Physiology. 2019 ;180:342-355.
Schaffer LV, Millikin RJ, Miller RM, Anderson LC, Fellers RT, Ge Y, Kelleher NL, Leduc RD, Liu XW, Payne SH, et al. Identification and Quantification of Proteoforms by Mass Spectrometry. Proteomics. 2019 ;19.
Miller RM, Millikin RJ, Hoffmann CV, Solntsev SK, Sheynkman GM, Shortreed MR, Smith LM. Improved Protein Inference from Multiple Protease Bottom-Up Mass Spectrometry Data. Journal of Proteome Research. 2019 ;18:3429-3438.
Schaffer LV, Tucholski T, Shortreed MR, Ge Y, Smith LM. Intact-Mass Analysis Facilitating the Identification of Large Human Heart Proteoforms. Analytical Chemistry. 2019 ;91:10937-10942.
Gemperline DC, Marshall RS, Lee KH, Zhao QZ, Hu WM, McLoughlin F, Scalf M, Smith LM, Vierstra RD. Proteomic analysis of affinity-purified 26S proteasomes identifies a suite of assembly chaperones in Arabidopsis. Journal of Biological Chemistry. 2019 ;294:17570-17592.