All Faculty and Research Staff Publications

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Asbury JB, Steinel T, Stromberg C, Corcelli SA, Lawrence CP, Skinner JL, Fayer MD. Water dynamics: Vibrational echo correlation spectroscopy and comparison to molecular dynamics simulations. Journal of Physical Chemistry A. 2004 ;108:1107-1119.
Asmis KR, Santambrogio G, Zhou J, Garand E, Headrick J, Goebbert D, Johnson MA, Neumark DM. Vibrational spectroscopy of hydrated electron clusters (H2O)(15-50)(-) via infrared multiple photon dissociation. Journal of Chemical Physics. 2007 ;126.
Asplund MC, Zanni MT, Hochstrasser RM. Two-dimensional infrared spectroscopy of peptides by phase-controlled femtosecond vibrational photon echoes. Proceedings of the National Academy of Sciences of the United States of America. 2000 ;97:8219-8224.
Aston C, Hiort C, Schwartz DC. Optical mapping: an approach for fine mapping. Methods in Enzymology. 1999 ;303:55-73.
Aston C, Mishra B, Schwartz DC. Optical mapping and its potential for large-scale sequencing projects. Trends in Biotechnology. 1999 ;17:297-302.
Asuke T, West R. Properties of some polysilane polymers: (n-PrSiMe) n , (i-PrSiMe) n , and (sec-BuSiMe) n . Journal of Inorganic and Organometallic Polymers. 1995 ;5:31-42.
Asuke T, West R. Poly(normal-butyl-normal-hexylsilylene), a liquid-crystalline polysilane. Macromolecules. 1991 ;24:343-344.
Atanasov M, Brunold TC, Gudel HU, Daul C. Charge-transfer spectra and bonding in tetrahedral Mn-VI, Cr-V, and V-IV and Mn-VII, Cr-VI and V-V oxo anions. Inorganic Chemistry. 1998 ;37:4589-4602.
Attie AD, Raines RT. Analysis of Receptor-Ligand Interactions. Journal of Chemical Education. 1995 ;72:119-124.
Aubin SMJ, Sun ZM, Guzei IA, Rheingold AL, Christou G, Hendrickson DN. Single-molecule magnets: isomeric Mn12O12(O(2)CC(6)H(4)Me4)(16)(H2O)(4) complexes exhibiting different rates of resonant magnetization tunnelling. Chemical Communications. 1997 :2239-2240.
Aubin SMJ, Sun ZM, Eppley HJ, Rumberger EM, Guzei IA, Folting K, Gantzel PK, Rheingold AL, Christou G, Hendrickson DN. Single-molecule magnets: Jahn-Teller isomerism and the origin of two magnetization relaxation processes in Mn(12) complexes. Inorganic Chemistry. 2001 ;40:2127-2146.
Auer B, Kumar R, Schmidt JR, Skinner JL. Hydrogen bonding and Raman, IR, and 2D-IR spectroscopy of dilute HOD in liquid D2O. Proceedings of the National Academy of Sciences of the United States of America. 2007 ;104:14215-14220.
Auer BM, Skinner JL. IR and Raman spectra of liquid water: Theory and interpretation. Journal of Chemical Physics. 2008 ;128.
Auer GK, Weibel DB. Bacterial Cell Mechanics. Biochemistry. 2017 ;56:3710-3724.
Auer BM, Skinner JL. Dynamical effects in line shapes for coupled chromophores: Time-averaging approximation. Journal of Chemical Physics. 2007 ;127.
Auer GK, Lee TK, Rajendram M, Cesar S, Miguel A, Huang KC, Weibel DB. Mechanical Genomics Identifies Diverse Modulators of Bacterial Cell Stiffness. Cell Systems. 2016 ;2:402-411.
Auer BM, Skinner JL. Vibrational sum-frequency spectroscopy of the liquid/vapor interface for dilute HOD in D2O. Journal of Chemical Physics. 2008 ;129.
Auer BM, Skinner JL. Water: Hydrogen bonding and vibrational spectroscopy, in the bulk liquid and at the liquid/vapor interface. Chemical Physics Letters. 2009 :13-20.
Auer BM, Skinner JL. Vibrational Sum-Frequency Spectroscopy of the Water Liquid/Vapor Interface. Journal of Physical Chemistry B. 2009 ;113:4125-4130.
Augustyniak E, Chew KH, Shohet JL, Woods RC. Atomic absorption spectroscopic measurements of silicon atom concentrations in electron cyclotron resonance silicon oxide deposition plasmas. Journal of Applied Physics. 1999 ;85:87-93.
Aukema KG, Kron EM, Herdendorf TJ, Forest KT. Functional dissection of a conserved motif within the pilus retraction protein PilT. Journal of Bacteriology. 2005 ;187:611-618.
Auldridge ME, Satyshur KA, Anstrom DM, Forest KT. Structure-guided Engineering Enhances a Phytochrome-based Infrared Fluorescent Protein. Journal of Biological Chemistry. 2012 ;287:7000-7009.
Auldridge ME, Forest KT. Bacterial phytochromes: More than meets the light. Critical Reviews in Biochemistry and Molecular Biology. 2011 ;46:67-88.
Ault AP, Guasco TL, Ryder OS, Baltrusaitis J, Cuadra-Rodriguez LA, Collins DB, Ruppel MJ, Bertram TH, Prather KA, Grassian VH. Inside versus Outside: Ion Redistribution in Nitric Acid Reacted Sea Spray Aerosol Particles as Determined by Single Particle Analysis. Journal of the American Chemical Society. 2013 ;135:14528-14531.
Ault AP, Moffet RC, Baltrusaitis J, Collins DB, Ruppel MJ, Cuadra-Rodriguez LA, Zhao DF, Guasco TL, Ebben CJ, Geiger FM, et al. Size-Dependent Changes in Sea Spray Aerosol Composition and Properties with Different Seawater Conditions. Environmental Science & Technology. 2013 ;47:5603-5612.
Austad BC, Hart AC, Burke SD. Halichondrin B: synthesis of the C(37)-C(54) subunit. Tetrahedron. 2002 ;58:2011-2026.
Austin S, Kontur WS, Ulbrich A, Oshlag JZ, Zhang WP, Higbee A, Zhang YP, Coon JJ, Hodge DB, Donohue TJ, et al. Metabolism of Multiple Aromatic Compounds in Corn Stover Hydrolysate by Rhodopseudomonas palustris. Environmental Science & Technology. 2015 ;49:8914-8922.
Avouris P, Bozso F, Hamers RJ. THE REACTION OF SI(100) 2X1 WITH NO AND NH3 - THE ROLE OF SURFACE DANGLING BONDS. Journal of Vacuum Science & Technology B. 1987 ;5:1387-1392.
Ayala YM, Vindigni A, Nayal M, Spolar RS, Record MT, Dicera E. Thermodynamic Investigation of Hirudin Binding to the Slow and Fast Forms of Thrombin - Evidence for Folding Transitions in the Inhibitor and Protease Coupled to Binding. Journal of Molecular Biology. 1995 ;253:787-798.
Ayaz-Guner S, Zhang J, Li L, Walker JW, Ge Y. In Vivo Phosphorylation Site Mapping in Mouse Cardiac Troponin I by High Resolution Top-Down Electron Capture Dissociation Mass Spectrometry: Ser22/23 Are the Only Sites Basally Phosphorylated. Biochemistry. 2009 ;48:8161-8170.
Aytar BS, Muller JPE, Golan S, Hata S, Takahashi H, Kondo Y, Talmon Y, Abbott NL, Lynn DM. Addition of ascorbic acid to the extracellular environment activates lipoplexes of a ferrocenyl lipid and promotes cell transfection. Journal of Controlled Release. 2012 ;157:249-259.
Aytar BS, Muller JPE, Kondo Y, Abbott NL, Lynn DM. Spatial Control of Cell Transfection Using Soluble or Solid-Phase Redox Agents and a Redox-Active Ferrocenyl Lipid. ACS Applied Materials & Interfaces. 2013 ;5:8283-8288.
Aytar BS, Muller JPE, Golan S, Kondo Y, Talmon Y, Abbott NL, Lynn DM. Chemical oxidation of a redox-active, ferrocene-containing cationic lipid: Influence on interactions with DNA and characterization in the context of cell transfection. Journal of Colloid and Interface Science. 2012 ;387:56-64.
Aytar BS, Muller JPE, Kondo Y, Talmon Y, Abbott NL, Lynn DM. Redox-Based Control of the Transformation and Activation of siRNA Complexes in Extracellular Environments Using Ferrocenyl Lipids. Journal of the American Chemical Society. 2013 ;135:9111-9120.
Aytar BS, Prausnitz MR, Lynn DM. Rapid Release of Plasmid DNA from Surfaces Coated with Polyelectrolyte Multilayers Promoted by the Application of Electrochemical Potentials. ACS Applied Materials & Interfaces. 2012 ;4:2726-2734.
Azevedo J, S. Tilley D, Schreier M, Stefik M, Sousa C, Araujo JPedro, Mendes A, Gratzel M, Mayer MT. Tin oxide as stable protective layer for composite cuprous oxide water-splitting photocathodes. Nano Energy. 2016 ;24:10-16.
Azuma K, Sung J, Choo Y, Rokhlenko Y, Dwyer JH, Schweitzer B, Hayakawa T, Osuji CO, Gopalan P. Self-Assembly of an Ultrahigh-chi Block Copolymer with Versatile Etch Selectivity. Macromolecules. 2018 ;51:6460-6467.
Babcock SE, Kuech TF, Jr JAFreitas. Bulk nitride semiconductors 2002 - Proceedings of the International Workshop on Bulk Nitride Semiconductors, Amazonas, Brazil, 18-23 May 2002 - Preface. Journal of Crystal Growth. 2002 ;246:VII-VII.
Bach A, Hutchison JM, Holiday RJ, Crim FF. Photodissociation of vibrationally excited ammonia: Rotational excitation in the NH2 product. Journal of Chemical Physics. 2003 ;118:7144-7145.
Bach A, Hutchison JM, Holiday RJ, Crim FF. Competition between adiabatic and nonadiabatic pathways in the photodissociation of vibrationally excited ammonia. Journal of Physical Chemistry A. 2003 ;107:10490-10496.
Bach A, Hutchison JM, Holiday RJ, Crim FF. Vibronic structure and photodissociation dynamics of the (A)over-tilde state of jet-cooled ammonia. Journal of Chemical Physics. 2002 ;116:9315-9325.
Bach A, Hutchison JM, Holiday RJ, Crim FF. Vibrational spectroscopy and photodissociation of jet-cooled ammonia. Journal of Chemical Physics. 2002 ;116:4955-4961.
Badalyan A, Stahl SS. Cooperative electrocatalytic alcohol oxidation with electron-proton-transfer mediators. Nature. 2016 ;535:406-410.
Badenhoop JK, Weinhold F. Natural bond orbital analysis of steric interactions. Journal of Chemical Physics. 1997 ;107:5406-5421.
Badenhoop JK, Weinhold F. Natural steric analysis: Ab initio van der Waals radii of atoms and ions. Journal of Chemical Physics. 1997 ;107:5422-5432.
Badenhoop JK, Weinhold F. Natural steric analysis of internal rotation barriers. International Journal of Quantum Chemistry. 1999 ;72:269-280.
Baeck S-H, Choi KS, Jaramillo TF, Stucky GD, McFarland EW. Enhancement of photocatalytic and electrochromic properties of electrochemically fabricated mesoporous WO3 thin films. Adv. Mater. (Weinheim, Ger.). 2003 ;15:1269-1273.
Bagchi K, Jackson NE, Gujral A, Huang CB, Toney MF, Yu L, de Pablo JJ, Ediger MD. Origin of Anisotropic Molecular Packing in Vapor-Deposited Alq3 Glasses. Journal of Physical Chemistry Letters. 2019 ;10:164-170.
Bagchi K, Gujral A, Toney MF, Ediger MD. Generic packing motifs in vapor-deposited glasses of organic semiconductors. Soft Matter. 2019 ;15:7590-7595.
Bai H, Xue RH, Bao H, Zhang LL, Yethiraj A, Cui Q, Chapman ER. Different states of synaptotagmin regulate evoked versus spontaneous release. Nature Communications. 2016 ;7.