All Faculty and Research Staff Publications

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Jin YT, Peng Y, Lin ZQ, Chen YC, Wei LM, Hacker TA, Larsson L, Ge Y. Comprehensive analysis of tropomyosin isoforms in skeletal muscles by top-down proteomics. Journal of Muscle Research and Cell Motility. 2016 ;37:41-52.
Yu DY, Peng Y, Ayaz-Guner S, Gregorich ZR, Ge Y. Comprehensive Characterization of AMP-Activated Protein Kinase Catalytic Domain by Top-Down Mass Spectrometry. Journal of the American Society for Mass Spectrometry. 2016 ;27:220-232.
Majumder A, Helms PL, Andrew TL, Menon R. A comprehensive simulation model of the performance of photochromic films in absorbance-modulation-optical-lithography. Aip Advances. 2016 ;6.
Zhang CY, Han C, Sholl DS, Schmidt JR. Computational Characterization of Defects in Metal-Organic Frameworks: Spontaneous and Water-Induced Point Defects in ZIF-8. Journal of Physical Chemistry Letters. 2016 ;7:459-464.
Schulte KL, Simon J, Roy A, Reedy RC, Young DL, Kuech TF, Ptak AJ. Computational fluid dynamics-aided analysis of a hydride vapor phase epitaxy reactor. Journal of Crystal Growth. 2016 ;434:138-147.
Goltl F, Michel C, Andrikopoulos PC, Love AM, Hafner J, Hermans I, Sautet P. Computationally Exploring Confinement Effects in the Methane-to-Methanol Conversion Over Iron-Oxo Centers in Zeolites. ACSCatalysis. 2016 ;6:8404-8409.
Foarta F, Landis CR. Condensation Oligomers with Sequence Control but without Coupling Reagents and Protecting Groups via Asymmetric Hydroformylation and Hydroacyloxylation. Journal of Organic Chemistry. 2016 ;81:11250-11255.
McDaniel JG, Choi E, Son CY, Schmidt JR, Yethiraj A. Conformational and Dynamic Properties of Poly(ethylene oxide) in an Ionic Liquid: Development and Implementation of a First-Principles Force Field. Journal of Physical Chemistry B. 2016 ;120:231-243.
Korn JA, Tabor DP, Sibert EL, Zwier TS. Conformation-specific spectroscopy of alkyl benzyl radicals: Effects of a radical center on the CH stretch infrared spectrum of an alkyl chain. Journal of Chemical Physics. 2016 ;145.
Walsh PS, Dean JC, McBurney C, Kang H, Gellman SH, Zwier TS. Conformation-specific spectroscopy of capped glutamine-containing peptides: role of a single glutamine residue on peptide backbone preferences. Physical Chemistry Chemical Physics. 2016 ;18:11306-11322.
Johnson MD, May SA, Calvin JR, Lambertus GR, Kokitkar PB, Landis CR, Jones BR, Abrams ML, Stout JR. Continuous Liquid Vapor Reactions Part 1: Design and Characterization of a Reactor for Asymmetric Hydroformylation. Org. Process Res. Dev. 2016 ;20:888-900.
Abrams ML, Buser JY, Calvin JR, Johnson MD, Jones BR, Lambertus G, Landis CR, Martinelli JR, May SA, McFarland AD, et al. Continuous Liquid Vapor Reactions Part 2: Asymmetric Hydroformylation with Rhodium-Bisdiazaphos Catalysts in a Vertical Pipes-in-Series Reactor. Org. Process Res. Dev. 2016 ;20:901-910.
Culham DE, Shkel IA, Record MT, Wood JM. Contributions of Coulombic and Hofmeister Effects to the Osmotic Activation of Escherichia coli Transporter ProP. Biochemistry. 2016 ;55:1301-1313.
Yin Y, Han JC, Zhang YM, Zhang XH, Xu P, Yuan Q, Samad L, Wang XJ, Wang Y, Zhang ZH, et al. Contributions of Phase, Sulfur Vacancies, and Edges to the Hydrogen Evolution Reaction Catalytic Activity of Porous Molybdenum Disulfide Nanosheets. Journal of the American Chemical Society. 2016 ;138:7965-7972.
Badalyan A, Stahl SS. Cooperative electrocatalytic alcohol oxidation with electron-proton-transfer mediators. Nature. 2016 ;535:406-410.
Jin HY, Goyal P, Das AK, Gaus M, Meuwly M, Cui Q. Copper Oxidation/Reduction in Water and Protein: Studies with DFTB3/MM and VALBOND Molecular Dynamics Simulations. Journal of Physical Chemistry B. 2016 ;120:1894-1910.
Wolf P, Valla M, Nunez-Zarur F, Comas-Vives A, Rossini AJ, Firth C, Kallas H, Lesage A, Emsley L, Coperet C, et al. Correlating Synthetic Methods, Morphology, Atomic-Level Structure, and Catalytic Activity of Sn-beta Catalysts. Acs Catalysis. 2016 ;6:4047-4063.
Anson CW, Ghosh S, Hammes-Schiffer S, Stahl SS. Co(salophen)-Catalyzed Aerobic Oxidation of p-Hydroquinone: Mechanism and Implications for Aerobic Oxidation Catalysis. Journal of the American Chemical Society. 2016 ;138:4186-4193.
Carter MCD, Lynn DM. Covalently Crosslinked and Physically Stable Polymer Coatings with Chemically Labile and Dynamic Surface Features Fabricated by Treatment of Azlactone-Containing Multilayers with Alcohol-, Thiol-, and Hydrazine-Based Nucleophiles. Chemistry of Materials. 2016 ;28:5063-5072.
Johnson KA, Biswas S, Weix DJ. Cross-Electrophile Coupling of Vinyl Halides with Alkyl Halides. Chemistry-A European Journal. 2016 ;22:7399-7402.
Chattopadhyay D, Swingle MR, Salter EA, Wood E, D'Arcy B, Zivanov C, Abney K, Musiyenko A, Rusin SF, Kettenbach A, et al. Crystal structures and mutagenesis of PPP-family ser/thr protein phosphatases elucidate the selectivity of cantharidin and novel norcantharidin-based inhibitors of PP5C. Biochemical Pharmacology. 2016 ;109:14-26.
Musumeci D, Hasebe M, Yu L. Crystallization of Organic Glasses: How Does Liquid Flow Damage Surface Crystal Growth?. Crystal Growth & Design. 2016 ;16:2931-2936.
Huihui KMM, Caputo JA, Melchor Z, Olivares AM, Spiewak AM, Johnson KA, DiBenedetto TA, Kim S, Ackerman LKG, Weix DJ. Decarboxylative Cross-Electrophile Coupling of N-Hydroxyphthalimide Esters with Aryl Iodides. Journal of the American Chemical Society. 2016 ;138:5016-5019.
Lera RF, Potts GK, Suzuki A, Johnson JM, Salmon ED, Coon JJ, Burkard ME. Decoding Polo-like kinase 1 signaling along the kinetochore-centromere axis. Nature Chemical Biology. 2016 ;12:411-U61.
Gold B, Aronoff MR, Raines RT. Decreasing Distortion Energies without Strain: Diazo-Selective 1,3-Dipolar Cycloadditions. Journal of Organic Chemistry. 2016 ;81:5998-6006.
Esselman B, Hill NJ, Tucker WB, Zdanovskaia MA, Habib AD. Deeper Analysis of the EAS Nitration of Bromobenzene: A Computational and Spectroscopic Study for the Undergraduate Organic Laboratory. Chemical Educator. 2016 ;21:166-172.
Zayas-Gonzalez YM, Lynn DM. Degradable Amine-Reactive Coatings Fabricated by the Covalent Layer-by-Layer Assembly of Poly(2-vinyl-4,4-dimethylazlactone) with Degradable Polyamine Building Blocks. Biomacromolecules. 2016 ;17:3067-3075.
Liu RS, Wang JH, Tang WP, Fang H. Design and synthesis of a new generation of substituted purine hydroxamate analogs as histone deacetylase inhibitors. Bioorganic & Medicinal Chemistry. 2016 ;24:1446-1454.
Gerstner NC, Adams CS, Grigg RD, Tretbar M, Rigoli JW, Schomaker JM. Diastereoselective Synthesis of the Aminocyclitol Core of Jogyamycin via an Allene Aziridination Strategy. Organic Letters. 2016 ;18:284-287.
White PB, Jaworski JN, Zhu GHarry, Stahl SS. Diazafluorenone-Promoted Oxidation Catalysis: Insights into the Role of Bidentate Ligands in Pd-Catalyzed Aerobic Aza-Wacker Reactions. Acs Catalysis. 2016 ;6:3340-3348.
Mix KA, Aronoff MR, Raines RT. Diazo Compounds: Versatile Tools for Chemical Biology. ACS Chemical Biology. 2016 ;11:3233-3244.
Bai H, Xue RH, Bao H, Zhang LL, Yethiraj A, Cui Q, Chapman ER. Different states of synaptotagmin regulate evoked versus spontaneous release. Nature Communications. 2016 ;7.
Chu CK, Ziegler DT, Carr B, Wickens ZK, Grubbs RH. Direct Access to beta-Fluorinated Aldehydes by Nitrite-Modified Wacker Oxidation. Angewandte Chemie-International Edition. 2016 ;55:8435-8439.
Dufour YS, Gillet S, Frankel NW, Weibel DB, Emonet T. Direct Correlation between Motile Behavior and Protein Abundance in Single Cells. Plos Computational Biology. 2016 ;12.
Sato TK, Tremaine M, Parreiras LS, Hebert AS, Myers KS, Higbee AJ, Sardi M, McIlwain SJ, Ong IM, Breuer RJ, et al. Directed Evolution Reveals Unexpected Epistatic Interactions That Alter Metabolic Regulation and Enable Anaerobic Xylose Use by Saccharomyces cerevisiae. Plos Genetics. 2016 ;12.
Shaner SE, Hooker PD, Nickel AM, Leichtfuss AR, Adams CS, de la Cerda D, She YQ, Gerken JB, Pokhrel R, Ambrose NJ, et al. Discovering Inexpensive, Effective Catalysts for Solar Energy Conversion: An Authentic Research Laboratory Experience. Journal of Chemical Education. 2016 ;93:650-657.
Chung DH, Golden JE, Adcock RS, Schroeder CE, Chu YK, Sotsky JB, Cramer DE, Chilton PM, Song CS, Anantpadma M, et al. Discovery of a Broad-Spectrum Antiviral Compound That Inhibits Pyrimidine Biosynthesis and Establishes a Type 1 Interferon-Independent Antiviral State. Antimicrobial Agents and Chemotherapy. 2016 ;60:4552-4562.
Hideshima T, Qi J, Paranal RM, Tang WP, Greenberg E, West N, Colling ME, Estiu G, Mazitschek R, Perry JA, et al. Discovery of selective small-molecule HDAC6 inhibitor for overcoming proteasome inhibitor resistance in multiple myeloma. Proceedings of the National Academy of Sciences of the United States of America. 2016 ;113:13162-13167.
Lee S, Oh Y, Lee J, Choe S, Lim S, Lee HS, Jo K, Schwartz DC. DNA binding fluorescent proteins for the direct visualization of large DNA molecules. Nucleic Acids Research. 2016 ;44:e6.
Skubi KL, Blum TR, Yoon TP. Dual Catalysis Strategies in Photochemical Synthesis. Chemical Reviews. 2016 ;116:10035-10074.
Merrill WG, Crim FF, Case AS. Dynamics and yields for CHBrCl2 photodissociation from 215-265 nm. Physical Chemistry Chemical Physics. 2016 ;18:32999-33008.
Mantha S, Yethiraj A. Dynamics of water confined in lyotropic liquid crystals: Molecular dynamics simulations of the dynamic structure factor. Journal of Chemical Physics. 2016 ;144.
McDaniel JG, Mantha S, Yethiraj A. Dynamics of Water in Gemini Surfactant-Based Lyotropic Liquid Crystals. Journal of Physical Chemistry B. 2016 ;120:10860-10868.
Kozlowski M, Yoon TP. Editorial for the Special Issue on Photocatalysis. Journal of Organic Chemistry. 2016 ;81:6895-6897.
Karanjkar PU, Burt SP, Chen XL, Barnett KJ, Ball MR, Kumbhalkar MD, Wang XH, Miller JB, Hermans I, Dumesic JA, et al. Effect of carbon supports on RhRe bifunctional catalysts for selective hydrogenolysis of tetrahydropyran-2-methanol. Catalysis Science & Technology. 2016 ;6:7841-7851.
Li WT, Bouveret E, Zhang Y, Liu KQ, Wang JD, Weisshaar JC. Effects of amino acid starvation on RelA diffusive behavior in live Escherichia coli. Molecular Microbiology. 2016 ;99:571-585.
Kreitler DF, Mortenson DE, Forest KT, Gellman SH. Effects of Single alpha-to-beta Residue Replacements on Structure and Stability in a Small Protein: Insights from Quasiracemic Crystallization. Journal of the American Chemical Society. 2016 ;138:6498-6505.
Roylance JJ, Kim TW, Choi KS. Efficient and Selective Electrochemical and Photoelectrochemical Reduction of 5-Hydroxymethylfurfural to 2,5-Bis(hydroxymethyl)furan using Water as the Hydrogen Source. ACS Catalysis. 2016 ;6:1840-1847.
Roylance JJ, Choi KS. Electrochemical reductive amination of furfural-based biomass intermediates. Green Chemistry. 2016 ;18:5412-5417.
Roylance JJ, Choi KS. Electrochemical reductive biomass conversion: direct conversion of 5-hydroxymethylfurfural (HMF) to 2,5-hexanedione (HD) via reductive ring-opening. Green Chemistry. 2016 ;18:2956-2960.