All Faculty and Research Staff Publications

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1994
Guo Z, Guilfoyle RA, Thiel AJ, Wang R, Smith LM. Direct fluorescence analysis of genetic polymorphisms by hybridization with oligonucleotide arrays on glass supports. Nucleic Acids Research. 1994 ;22:5456-65.
Guilfoyle RA, Smith LM. A direct selection strategy for shotgun cloning and sequencing in the bacteriophage M13. Nucleic Acids Research. 1994 ;22:100-7.
Hou WY, Smith LM. DNA sequencing with a hexamer string primer and dye-labeled terminators. Analytical Biochemistry. 1994 ;221:136-141.
Denton DD, Thiel AJ, Smith LM, Bajikar S, White V, Ghodssi R, Fish G, McCaughan L. Fabrication of microstructures for use in biological and optical applications. Proceedings - Electrochemical Society. 1994 ;94-14:103-14.
Kolner DE, Guilfoyle RA, Smith LM. A high throughput system for the preparation of single stranded templates grown in microculture. DNA Sequence. 1994 ;4:253-7.
Ji H, Smith LM, Guilfoyle RA. Rapid isolation of cosmid insert DNA by triple-helix-mediated affinity capture. Genetic Analysis, Techniques and Applications. 1994 ;11:43-7.
Mouradian S, Brumley RL, Smith LM. Separating field strength, temperature, and pulsing effects in pulsed field electrophoresis. Electrophoresis. 1994 ;15:1084-1090.
Collins FS, Benjamin LJ, Botstein D, Cox JR, Davidson N, Gray JW, Holtzman N, Housman DE, Jamison KR, Nelkin D, et al. Statement on use of DNA testing for presymptomatic identification of cancer risk. JAMA. 1994 ;271:785-785.
1996
Mouradian S, Rank DR, Smith LM. Analyzing sequencing reactions from bacteriophage M13 by matrix-assisted laser desorption/ionization mass spectrometry. Rapid Communications in Mass Spectrometry. 1996 ;10:1475-1478.
Rank D, Smith LM. Automated DNA sequencers: the next generation. Optics and Photonics News. 1996 ;7:29-33.
Yin ZB, Severin J, Giddings MC, Huang WA, Westphall MS, Smith LM. Automatic matrix determination in four dye fluorescence-based DNA sequencing. Electrophoresis. 1996 ;17:1143-1150.
Buxton EC, Westphall M, Jacobson W, Tong XC, Smith LM. Automation in large-scale DNA sequencing. Laboratory Robotics and Automation. 1996 ;8:339-349.
Brow MAD, Oldenburg MC, Lyamichev V, Heisler LM, Grotelueschen J, Lyamicheva N, Kozyavkin S, Fors L, Dahlberg JE, Smith LM, et al. The Cleavase Fragment Length Polymorphism (CFLP) assay. Biochemica. 1996 ;1:14-15.
Brow MAD, Oldenburg MC, Lyamichev V, Heisler LM, Lyamicheva N, Hall JG, Eagan NJ, Olive DM, Smith LM, Fors L, et al. Differentiation of bacterial 16S rRNA genes and intergenic regions and Mycobacterium tuberculosis katG genes by structure-specific endonuclease cleavage. Journal of Clinical Microbiology. 1996 ;34:3129-3137.
Nelson CM, Zhu L, Tang W, Smith LM, Crellin K, Berry J, Beauchamp JL. Fragmentation mechanisms of oligonucleotides in MALDI mass spectrometry. Proceedings of SPIE - The International Society for Optical Engineering. 1996 ;2680:247-255.
Smith LM, Brumley, Jr. RL, Buxton EC, Giddings M, Marchbanks M, Tong X. High-speed automated DNA sequencing in ultrathin slab gels. Methods in Enzymology. 1996 ;271:219-237.
Chen DH, Johnson AF, Severin JM, Rank DR, Smith LM, Guilfoyle RA. M13-102: A vector for facilitating construction and improving quality of M13 shotgun libraries. Gene. 1996 ;172:53-57.
Brow MAD, Oldenburg MC, Lyamichev V, Heisler LM, Grotelueschen J, Lyamicheva N, Kozyavkin S, Fors L, Dahlberg J, Smith LM, et al. Mutation detection by cleavase fragment length polymorphism. Focus. 1996 ;18:2-5.
Johnson AF, Wang RF, Ji HM, Chen DH, Guilfoyle RA, Smith LM. Purification of single-stranded M13 DNA by cooperative triple-helix-mediated affinity capture. Analytical Biochemistry. 1996 ;234:83-95.
Ji HM, Francisco T, Smith LM, Guilfoyle RA. Rapid restriction mapping of cosmids by sequence-specific triple-helix-mediated affinity capture. Genomics. 1996 ;31:185-192.
Mouradian S, Nelson CM, Smith LM. A self-assembled matrix monolayer for UV-MALDI mass spectrometry. Journal of the American Chemical Society. 1996 ;118:8639-8645.
Smith LM. Sequence from spectrometry: a realistic prospect?. Nature Biotechnology. 1996 ;14:1084, 1087.
1997
Ono T, Scalf M, Smith LM. 2'-fluoro modified nucleic acids: polymerase-directed synthesis, properties and stability to analysis by matrix-assisted laser desorption/ionization mass spectrometry. Nucleic Acids Research. 1997 ;25:4581-4588.
Tang W, Zhu L, Smith LM. Controlling DNA Fragmentation in MALDI-MS by Chemical Modification. Analytical Chemistry. 1997 ;69:302-312.
Frutos AG, Liu QH, Thiel AJ, Sanner AMW, Condon AE, Smith LM, Corn RM. Demonstration of a word design strategy for DNA computing on surfaces. Nucleic Acids Research. 1997 ;25:4748-4757.
Mouradian S, Skogen JW, Dorman FD, Zarrin F, Kaufman SL, Smith LM. DNA analysis using an electrospray scanning mobility particle sizer. Analytical Chemistry. 1997 ;69:919-925.
Guo Z, Liu QH, Smith LM. Enhanced discrimination of single nucleotide polymorphisms by artificial mismatch hybridization. Nature Biotechnology. 1997 ;15:331-335.
Tang W, Krause J, Zhu L, Smith LM. Factors influencing oligonucleotide stability in matrix-assisted laser desorption/ionization (MALDI) mass spectroscopy. International Journal of Mass Spectrometry and Ion Processes. 1997 ;169/170:301-311.
Griffin TJ, Tang W, Smith LM. Genetic analysis by peptide nucleic acid affinity MALDI-TOF mass spectrometry. Nature Biotechnology. 1997 ;15:1368-1372.
Thiel AJ, Frutos AG, Jordan CE, Corn RM, Smith LM. In situ surface plasmon resonance imaging detection of DNA hybridization to oligonucleotide arrays on gold surfaces. Analytical Chemistry. 1997 ;69:4948-4956.
Guilfoyle RA, Leeck CL, K. Kroening D, Smith LM, Guo Z. Ligation-mediated PCR amplification of specific fragments from a Class-II restriction endonuclease. Nucleic Acids Research. 1997 ;25:1854-1858.
Tang W, Nelson CM, Zhu L, Smith LM. Positive ion formation in the ultraviolet matrix- assisted laser desorption/ionization analysis of oligonucleotides by using 2,5-dihydroxybenzoic acid. Journal of the American Society for Mass Spectrometry. 1997 ;8:218-224.

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