All Faculty and Research Staff Publications

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2018
Glover MS, Yu Q, Chen ZW, Shi XD, Kent KC, Li LJ. Characterization of intact sialylated glycopeptides and phosphorylated glycopeptides from IMAC enriched samples by EThcD fragmentation: Toward combining phosphoproteomics and glycoproteomics. International Journal of Mass Spectrometry. 2018 ;427:35-42.
Turski CA, Turski GN, Chen BM, Wang HH, Heidari M, Li LJ, Noguchi KK, Westmark C, Duncan I, Ikonomidou C. Clemastine effects in rat models of a myelination disorder. Pediatric Research. 2018 ;83:1200-1206.
Hao L, Wang JX, Page D, Asthana S, Zetterberg H, Carlsson C, Okonkwo OC, Li LJ. Comparative Evaluation of MS-based Metabolomics Software and Its Application to Preclinical Alzheimer's Disease. Scientific Reports. 2018 ;8.
Keller C, Maeda J, Jayaraman D, Chakraborty S, Sussman MR, Harris JM, Ane JM, Li LJ. Comparison of Vacuum MALDI and AP-MALDI Platforms for the Mass Spectrometry Imaging of Metabolites Involved in Salt Stress in Medicago truncatula. Frontiers in Plant Science. 2018 ;9.
Chen BM, Lietz CB, Li LJ. Coupling matrix-assisted ionization with high resolution mass spectrometry and electron transfer dissociation to characterize intact proteins and post-translational modifications. Analytical and Bioanalytical Chemistry. 2018 ;410:1007-1017.
Li LJ, Andren PE, Sweedler JV. Editorial and Review: 29th ASMS Sanibel Conference on Mass Spectrometry-Peptidomics: Bridging the Gap between Proteomics and Metabolomics by MS. Journal of the American Society for Mass Spectrometry. 2018 ;29:801-806.
Sackett SD, Tremmel DM, Ma FF, Feeney AK, Maguire RM, Brown ME, Zhou Y, Li X, O'Brien C, Li LJ, et al. Extracellular matrix scaffold and hydrogel derived from decellularized and delipidized human pancreas. Scientific Reports. 2018 ;8.
Chen BM, Ouyang CZ, Tian ZC, Xu M, Li LJ. A high resolution atmospheric pressure matrix-assisted laser desorption/ionization-quadrupole-orbitrap MS platform enables in situ analysis of biomolecules by multi-mode ionization and acquisition. Analytica Chimica Acta. 2018 ;1007:16-25.
Frost DC, Rust CJ, Robinson RAS, Li LJ. Increased N,N-Dimethyl Leucine Isobaric Tag Multiplexing by a Combined Precursor Isotopic Labeling and Isobaric Tagging Approach. Analytical Chemistry. 2018 ;90:10664-10669.
Ma FF, Sun RX, Tremmel DM, Sacket SD, Odorico J, Li LJ. Large-Scale Differentiation and Site Specific Discrimination of Hydroxyproline Isomers by Electron Transfer/Higher-Energy Collision Dissociation (EThcD) Mass Spectrometry. Analytical Chemistry. 2018 ;90:5857-5864.
Yao M, Chen BM, Zhao WP, Mehl JT, Li LJ, Zhu MS. LC-MS Differential Analysis for Fast and Sensitive Determination of Biotransformation of Therapeutic Proteins. Drug Metabolism and Disposition. 2018 ;46:451-457.
Buchberger AR, DeLaney K, Johnson J, Li LJ. Mass Spectrometry Imaging: A Review of Emerging Advancements and Future Insights. Analytical Chemistry. 2018 ;90:240-265.
Zhang YZ, DeLaney K, Hui LM, Wang JH, Sturm RM, Li LJ. A Multifaceted Mass Spectrometric Method to Probe Feeding Related Neuropeptide Changes in Callinectes sapidus and Carcinus maenas. Journal of the American Society for Mass Spectrometry. 2018 ;29:948-960.
Shearer MJ, Li MY, Li LJ, Jin S, Hamers RJ. Nanoscale Surface Photovoltage Mapping of 2D Materials and Heterostructures by Illuminated Kelvin Probe Force Microscopy. Journal of Physical Chemistry C. 2018 ;122:13564-13571.
Yang N, Anapindi KDB, Rubakhin SS, Wei PL, Yu Q, Li LJ, Kenny PJ, Sweedler JV. Neuropeptidomics of the Rat Habenular Nuclei. Journal of Proteome Research. 2018 ;17:1463-1473.
DeLaney K, Buchberger AR, Atkinson L, Grunder S, Mousley A, Li LJ. New techniques, applications and perspectives in neuropeptide research. Journal of Experimental Biology. 2018 ;221.
Cao QJW, Ouyang CZ, Zhong XF, Li LJ. Profiling of small molecule metabolites and neurotransmitters in crustacean hemolymph and neuronal tissues using reversed-phase LC-MS/MS. Electrophoresis. 2018 ;39:1241-1248.
Chen BM, Feng Y, Frost DC, Zhong XF, Buchberger AR, Johnson J, Xu M, Kim M, Puccetti D, Diamond C, et al. Quantitative Glycomic Analysis by Mass-Defect-Based Dimethyl Pyrimidinyl Ornithine (DiPyrO) Tags and High -Resolution Mass. Analytical Chemistry. 2018 ;90:7817-7823.
Stallcop LE, Alvarez-Garcia YR, Reyes-Ramos AM, Ramos-Cruz KP, Morgan MM, Shi YT, Li LJ, Beebe DJ, Domenech M, Warrick JW. Razor-printed sticker microdevices for cell-based applications. Lab on a Chip. 2018 ;18:451-462.
Chen ZW, Glover MS, Li LJ. Recent advances in ion mobility-mass spectrometry for improved structural characterization of glycans and glycoconjugates. Current Opinion in Chemical Biology. 2018 ;42:1-8.
Jiang XY, Xiang F, Jia CX, Buchberger AR, Li LJ. Relative Quantitation of Neuropeptides at Multiple Developmental Stages of the American Lobster Using N,N-Dimethyl Leucine Isobaric Tandem Mass Tags. ACS Chemical Neuroscience. 2018 ;9:2054-2063.
Han SL, Lv YN, Kong LY, Sun YM, Fu J, Li LJ, He LC. Simultaneous identification of the anaphylactoid components from traditional Chinese medicine injections using rat basophilic leukemia 2H3 and laboratory of allergic disease 2 dual-mixed/cell membrane chromatography model. Electrophoresis. 2018 ;39:1181-1189.
Chen ZW, Yu Q, Hao L, Liu FB, Johnson J, Tian ZC, Kao WJ, Xu W, Li LJ. Site-specific characterization and quantitation of N-glycopeptides in PKM2 knockout breast cancer cells using DiLeu isobaric tags enabled by electron-transfer/higher-energy collision dissociation (EThcD). Analyst. 2018 ;143:2508-2519.
Ma FF, Liu FB, Xu W, Li LJ. Surfactant and Chaotropic Agent Assisted Sequential Extraction/On-Pellet Digestion (SCAD) for Enhanced Proteomics. Journal of Proteome Research. 2018 ;17:2744-2754.
Chen BM, Zhong XF, Feng Y, Snovida S, Xu M, Rogers J, Li LJ. Targeted MultiNotch MS3 Approach for Relative Quantification of N-Glycans Using Multiplexed Carbonyl-Reactive Isobaric Tags. Analytical Chemistry. 2018 ;90:1129-1135.
2017
Zhang XM, Jiang S, Mitok KA, Li LJ, Attie AD, Martin TFJ. BAIAP3, a C2 domain-containing Munc13 protein, controls the fate of dense-core vesicles in neuroendocrine cells. Journal of Cell Biology. 2017 ;216:2151-2166.
Adnani N, Chevrette MG, Adibhatla SN, Zhang F, Yu Q, Braun DR, Nelson J, Simpkins SW, McDonald BR, Myers CL, et al. Coculture of Marine Invertebrate-Associated Bacteria and Interdisciplinary Technologies Enable Biosynthesis and Discovery of a New Antibiotic, Keyicin. ACS Chemical Biology. 2017 ;12:3093-3102.
Chen Z, Zhong X, Tie C, Chen B, Zhang X, Li LJ. Development of a hydrophilic interaction liquid chromatography coupled with matrix-assisted laser desorption/ionization-mass spectrometric imaging platform for N-glycan relative quantitation using stable-isotope labeled hydrazide reagents. Analytical and Bioanalytical Chemistry. 2017 ;409:4437-4447.
Cheloha RW, Chen BM, Kumar NN, Watanabe T, Thorne RG, Li LJ, Gardella TJ, Gellman SH. Development of Potent, Protease-Resistant Agonists of the Parathyroid Hormone Receptor with Broad beta Residue Distribution. Journal of Medicinal Chemistry. 2017 ;60:8816-8833.
Yu Q, Wang B, Chen Z, Urabe G, Glover MS, Shi X, Guo L-W, K. Kent C, Li LJ. Electron-Transfer/Higher-Energy Collision Dissociation (EThcD)-Enabled Intact Glycopeptide/Glycoproteome Characterization. Journal of the American Society for Mass Spectrometry. 2017 :Ahead of Print.
Hu CW, Worth M, Fan DC, Li BB, Li H, Lu L, Zhong XF, Lin ZQ, Wei LM, Ge Y, et al. Electrophilic probes for deciphering substrate recognition by O-GlcNAc transferase. Nature Chemical Biology. 2017 ;13:1267-+.
Fouque KJD, Garabedian A, Porter J, Baird M, Pang XQ, Williams TD, Li LJ, Shvartsburg A, Fernandez-Lima F. Fast and Effective Ion Mobility-Mass Spectrometry Separation of D-Amino-Acid-Containing Peptides. Analytical Chemistry. 2017 ;89:11787-11794.
Gemperline E, Horn HA, DeLaney K, Currie CR, Li LJ. Imaging with Mass Spectrometry of Bacteria on the Exoskeleton of Fungus-Growing Ants. ACS Chemical Biology. 2017 ;12:1980-1985.
Yu Q, Shi XD, Feng Y, Kent KC, Li LJ. Improving data quality and preserving HCD-generated reporter ions with EThcD for isobaric tag-based quantitative proteomics and proteome-wide PTM studies. Analytica Chimica Acta. 2017 ;968:40-49.
Frost DC, Buchberger AR, Li LJ. Mass Defect-Based Dimethyl Pyrimidinyl Ornithine (DiPyrO) Tags for Multiplex Quantitative Proteomics. Analytical Chemistry. 2017 ;89:10798-10805.
Hao L, Johnson J, Lietz CB, Buchberger A, Frost D, Kao WJ, Li LJ. Mass Defect-Based N,N-Dimethyl Leucine Labels for Quantitative Proteomics and Amine Metabolomics of Pancreatic Cancer Cells. Analytical Chemistry. 2017 ;89:1138-1146.
Liu FB, Ma FF, Wang YY, Hao L, Zeng H, Jia CX, Wang YD, Liu P, Ong IM, Li BB, et al. PKM2 methylation by CARM1 activates aerobic glycolysis to promote tumorigenesis. Nature Cell Biology. 2017 ;19:1358-1370.
Ye H, Wang JX, Tian ZC, Ma FF, Dowell J, Bremer Q, Lu GY, Baldo B, Li LJ. Quantitative Mass Spectrometry Reveals Food Intake-Induced Neuropeptide Level Changes in Rat Brain: Functional Assessment of Selected Neuropeptides as Feeding Regulators. Molecular & Cellular Proteomics. 2017 ;16:1922-1937.
Chen RB, Liu Y, Zhuang H, Yang BC, Hei KW, Xiao MM, Hou CY, Gao HJ, Zhang XR, Jia CX, et al. Quantitative proteomics reveals that long non-coding RNA MALAT1 interacts with DBC1 to regulate p53 acetylation. Nucleic Acids Research. 2017 ;45:9947-9959.
Zhu YC, Takayama T, Wang BW, Kent A, Zhang MX, Binder BYK, Urabe G, Shi YT, DiRenzo D, Goel SA, et al. Restenosis Inhibition and Re-differentiation of TGF beta/Smad3-activated Smooth Muscle Cells by Resveratrol. Scientific Reports. 2017 ;7.
Ma M, Zhao XY, Chen S, Zhao YY, Yang L, Feng Y, Qin WJ, Li LJ, Jia CX. Strategy Based on Deglycosylation, Multiprotease, and Hydrophilic Interaction Chromatography for Large-Scale Profiling of Protein Methylation. Analytical Chemistry. 2017 ;89:12909-12917.
Pang XQ, Jia CX, Chen ZW, Li LJ. Structural Characterization of Monomers and Oligomers of D-Amino Acid-Containing Peptides Using T-Wave Ion Mobility Mass Spectrometry. Journal of the American Society for Mass Spectrometry. 2017 ;28:110-118.
Yu Q, Canales A, Glover MS, Das R, Shi XD, Liu Y, Keller MP, Attie AD, Li LJ. Targeted Mass Spectrometry Approach Enabled Discovery of O-Glycosylated Insulin and Related Signaling Peptides in Mouse and Human Pancreatic Islets. Analytical Chemistry. 2017 ;89:9184-9191.
2016
Thomas S, Hao L, Ricke WA, Li LJ. Biomarker discovery in mass spectrometry-based urinary proteomics. Proteomics Clinical Applications. 2016 ;10:358-370.
Yu Q, Shi X, Greer T, Lietz CB, K. Kent C, Li LJ. Evaluation and Application of Dimethylated Amino Acids as Isobaric Tags for Quantitative Proteomics of the TGF-β/Smad3 Signaling Pathway. Journal of Proteome Research. 2016 ;15:3420-3431.
Gemperline E, Keller C, Jayaraman D, Maeda J, Sussman MR, Ane JM, Li LJ. Examination of Endogenous Peptides in Medicago truncatula Using Mass Spectrometry Imaging. Journal of Proteome Research. 2016 ;15:4403-4411.
Lu JF, Zhong XF, Liu HS, Hao L, Huang CTL, Sherafat MA, Jones J, Ayala M, Li LJ, Zhang SC. Generation of serotonin neurons from human pluripotent stem cells. Nature Biotechnology. 2016 ;34:89-94.
Hullinger R, Li M, Wang JX, Peng YJ, Dowell JA, Bomba-Warczak E, Mitchell HA, Burger C, Chapman ER, Denu JM, et al. Increased expression of AT-1/SLC33A1 causes an autistic-like phenotype in mice by affecting dendritic branching and spine formation. Journal of Experimental Medicine. 2016 ;213:1267-1284.
Hao L, Greer T, Page D, Shi YT, Vezina CM, Macoska JA, Marker PC, Bjorling DE, Bushman W, Ricke WA, et al. In-Depth Characterization and Validation of Human Urine Metabolomes Reveal Novel Metabolic Signatures of Lower Urinary Tract Symptoms. Scientific Reports. 2016 ;6.
Keil KP, Abler LL, Altmann HM, Bushman W, Marker PC, Li LJ, Ricke WA, Bjorling DE, Vezina CM. Influence of animal husbandry practices on void spot assay outcomes in C57BL/6J male mice. Neurourology and Urodynamics. 2016 ;35:192-198.

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