All Faculty and Research Staff Publications

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2019
Dieterich IA, Lawton AJ, Peng YJ, Yu Q, Rhoads TW, Overmyer KA, Cui YS, Armstrong EA, Howell PR, Burhans MS, et al. Acetyl-CoA flux regulates the proteome and acetyl-proteome to maintain intracellular metabolic crosstalk. Nature Communications. 2019 ;10.
Li GY, Cao QJW, Liu Y, DeLaney K, Tian ZC, Moskovets E, Li LJ. Characterizing and alleviating ion suppression effects in atmospheric pressure matrix-assisted laser desorption/ionization. Rapid Communications in Mass Spectrometry. 2019 ;33:327-335.
DeLaney K, Li LJ. Data Independent Acquisition Mass Spectrometry Method for Improved Neuropeptidomic Coverage in Crustacean Neural Tissue Extracts. Analytical Chemistry. 2019 ;91:5150-5158.
Zhu JH, Chen ZW, Zhang J, An MR, Wu J, Yu Q, Skilton S, Bern M, Sen KI, Li LJ, et al. Differential Quantitative Determination of Site-Specific Intact N-Glycopeptides in Serum Haptoglobin between Hepatocellular Carcinoma and Cirrhosis Using LC-EThcD-MS/MS. Journal of Proteome Research. 2019 ;18:359-371.
Zhong XF, Frost DC, Li LJ. High-Resolution Enabled 5-plex Mass Defect-Based N,N-Dimethyl Leucine Tags for Quantitative Proteomics. Analytical Chemistry. 2019 ;91:7991-7995.
Zhong XF, Yu QY, Ma FF, Frost DC, Lu L, Chen ZW, Zetterberg H, Carlsson C, Okonkwo O, Li LJ. HOTMAQ: A Multiplexed Absolute Quantification Method for Targeted Proteomics. Analytical Chemistry. 2019 ;91:2112-2119.
Feng Y, Chen BM, Yu QY, Li LJ. Identification of Double Bond Position Isomers in Unsaturated Lipids by m-CPBA Epoxidation and Mass Spectrometry Fragmentation. Analytical Chemistry. 2019 ;91:1791-1795.
Ma FF, Tremmel DM, Li ZH, Lietz CB, Sackett SD, Odorico JS, Li LJ. In Depth Quantification of Extracellular Matrix Proteins from Human Pancreas. Journal of Proteome Research. 2019 ;18:3156-3165.
Feng Y, Chen BM, Yu QY, Zhong XF, Frost DC, Ikonomidou C, Li LJ. Isobaric Multiplex Labeling Reagents for Carbonyl-Containing Compound (SUGAR) Tags: A Probe for Quantitative Glycomic Analysis. Analytical Chemistry. 2019 ;91:3141-3146.
Shi YT, Johnson J, Wang BW, Chen BM, Fisher GL, Urabe G, Shi XD, Kent KC, Guo LW, Li LJ. Mass Spectrometric Imaging Reveals Temporal and Spatial Dynamics of Bioactive Lipids in Arteries Undergoing Restenosis. Journal of Proteome Research. 2019 ;18:1669-1678.
Hao L, Zhu YR, Wei PL, Johnson J, Buchberger A, Frost D, Kao WJ, Li LJ. Metandem: An online software tool for mass spectrometry-based isobaric labeling metabolomics. Analytica Chimica Acta. 2019 ;1088:99-106.
Liu Y, Buchberger AR, DeLaney K, Li ZH, Li LJ. Multifaceted Mass Spectrometric Investigation of Neuropeptide Changes in Atlantic Blue Crab, Callinectes sapidus, in Response to Low pH Stress. Journal of Proteome Research. 2019 ;18:2759-2770.
Li GY, Ma FF, Cao QJW, Zheng Z, DeLaney K, Liu R, Li LJ. Nanosecond photochemically promoted click chemistry for enhanced neuropeptide visualization and rapid protein labeling. Nature Communications. 2019 ;10.
Acharya D, Miller I, Cui YS, Braun DR, Berres ME, Styles MJ, Li LJ, Kwan J, Rajski SR, Blackwell HE, et al. Omics Technologies to Understand Activation of a Biosynthetic Gene Cluster in Micromonospora sp. WMMB235: Deciphering Keyicin Biosynthesis. ACS Chemical Biology. 2019 ;14:1260-1270.
Ruiz M, Yang Y, Lochbaum CA, Delafield DG, Pignatello JJ, Li LJ, Pedersen JA. Peroxymonosulfate Oxidizes Amino Acids in Water without Activation. Environmental Science & Technology. 2019 ;53:10845-10854.
Hao L, Thomas S, Greer T, Vezina CM, Bajpai S, Ashok A, De Marzo AM, Bieberich CJ, Li LJ, Ricke WA. Quantitative proteomic analysis of a genetically induced prostate inflammation mouse model via custom 4-plex DiLeu isobaric labeling. American Journal of Physiology-Renal Physiology. 2019 ;316:F1236-F1243.
Hu QF, Li Z, Wang LZ, Huang Y, Wang YT, Li LJ. Rainfall Spatial Estimations: A Review from Spatial Interpolation to Multi-Source Data Merging. Water. 2019 ;11.
Vestal M, Li LJ, Dobrinskikh E, Shi YT, Wang BW, Shi XD, Li SC, Vestal C, Parker K. Rapid MALDI-TOF molecular imaging: Instrument enhancements and their practical consequences. Journal of Mass Spectrometry. 2019 .
DeLaney K, Sauer CS, Vu NQ, Li LJ. Recent Advances and New Perspectives in Capillary Electrophoresis-Mass Spectrometry for Single Cell "Omics". Molecules. 2019 ;24.
Zhong XF, Wang JX, Carlsson C, Okonkwo O, Zetterberg H, Li LJ. A Strategy for Discovery and Verification of Candidate Biomarkers in Cerebrospinal Fluid of Preclinical Alzheimer's Disease. Frontiers in Molecular Neuroscience. 2019 ;11.
Cao QJW, Wang YJ, Chen BM, Ma FF, Hao L, Li GY, Ouyang CZ, Li LJ. Visualization and Identification of Neurotransmitters in Crustacean Brain via Multifaceted Mass Spectrometric Approaches. ACS Chemical Neuroscience. 2019 ;10:1222-1229.
2018
Glover MS, Yu Q, Chen ZW, Shi XD, Kent KC, Li LJ. Characterization of intact sialylated glycopeptides and phosphorylated glycopeptides from IMAC enriched samples by EThcD fragmentation: Toward combining phosphoproteomics and glycoproteomics. International Journal of Mass Spectrometry. 2018 ;427:35-42.
Turski CA, Turski GN, Chen BM, Wang HH, Heidari M, Li LJ, Noguchi KK, Westmark C, Duncan I, Ikonomidou C. Clemastine effects in rat models of a myelination disorder. Pediatric Research. 2018 ;83:1200-1206.
Hao L, Wang JX, Page D, Asthana S, Zetterberg H, Carlsson C, Okonkwo OC, Li LJ. Comparative Evaluation of MS-based Metabolomics Software and Its Application to Preclinical Alzheimer's Disease. Scientific Reports. 2018 ;8.
Keller C, Maeda J, Jayaraman D, Chakraborty S, Sussman MR, Harris JM, Ane JM, Li LJ. Comparison of Vacuum MALDI and AP-MALDI Platforms for the Mass Spectrometry Imaging of Metabolites Involved in Salt Stress in Medicago truncatula. Frontiers in Plant Science. 2018 ;9.
Hao L, Shi YT, Thomas S, Vezina CM, Bajpai S, Ashok A, Bieberich CJ, Ricke WA, Li LJ. Comprehensive urinary metabolomic characterization of a genetically induced mouse model of prostatic inflammation. International Journal of Mass Spectrometry. 2018 ;434:185-192.
Chen BM, Lietz CB, Li LJ. Coupling matrix-assisted ionization with high resolution mass spectrometry and electron transfer dissociation to characterize intact proteins and post-translational modifications. Analytical and Bioanalytical Chemistry. 2018 ;410:1007-1017.
Li LJ, Andren PE, Sweedler JV. Editorial and Review: 29th ASMS Sanibel Conference on Mass Spectrometry-Peptidomics: Bridging the Gap between Proteomics and Metabolomics by MS. Journal of the American Society for Mass Spectrometry. 2018 ;29:801-806.
Sackett SD, Tremmel DM, Ma FF, Feeney AK, Maguire RM, Brown ME, Zhou Y, Li X, O'Brien C, Li LJ, et al. Extracellular matrix scaffold and hydrogel derived from decellularized and delipidized human pancreas. Scientific Reports. 2018 ;8.
Bratburd JR, Keller C, Vivas E, Gemperline E, Li LJ, Rey FE, Currie CR. Gut Microbial and Metabolic Responses to Salmonella enterica Serovar Typhimurium and Candida albicans. Mbio. 2018 ;9.
Chen BM, Ouyang CZ, Tian ZC, Xu M, Li LJ. A high resolution atmospheric pressure matrix-assisted laser desorption/ionization-quadrupole-orbitrap MS platform enables in situ analysis of biomolecules by multi-mode ionization and acquisition. Analytica Chimica Acta. 2018 ;1007:16-25.
Frost DC, Rust CJ, Robinson RAS, Li LJ. Increased N,N-Dimethyl Leucine Isobaric Tag Multiplexing by a Combined Precursor Isotopic Labeling and Isobaric Tagging Approach. Analytical Chemistry. 2018 ;90:10664-10669.
Ma FF, Sun RX, Tremmel DM, Sacket SD, Odorico J, Li LJ. Large-Scale Differentiation and Site Specific Discrimination of Hydroxyproline Isomers by Electron Transfer/Higher-Energy Collision Dissociation (EThcD) Mass Spectrometry. Analytical Chemistry. 2018 ;90:5857-5864.
Yao M, Chen BM, Zhao WP, Mehl JT, Li LJ, Zhu MS. LC-MS Differential Analysis for Fast and Sensitive Determination of Biotransformation of Therapeutic Proteins. Drug Metabolism and Disposition. 2018 ;46:451-457.
Buchberger AR, DeLaney K, Johnson J, Li LJ. Mass Spectrometry Imaging: A Review of Emerging Advancements and Future Insights. Analytical Chemistry. 2018 ;90:240-265.
Zhang YZ, DeLaney K, Hui LM, Wang JH, Sturm RM, Li LJ. A Multifaceted Mass Spectrometric Method to Probe Feeding Related Neuropeptide Changes in Callinectes sapidus and Carcinus maenas. Journal of the American Society for Mass Spectrometry. 2018 ;29:948-960.
Shearer MJ, Li MY, Li LJ, Jin S, Hamers RJ. Nanoscale Surface Photovoltage Mapping of 2D Materials and Heterostructures by Illuminated Kelvin Probe Force Microscopy. Journal of Physical Chemistry C. 2018 ;122:13564-13571.
Yang N, Anapindi KDB, Rubakhin SS, Wei PL, Yu Q, Li LJ, Kenny PJ, Sweedler JV. Neuropeptidomics of the Rat Habenular Nuclei. Journal of Proteome Research. 2018 ;17:1463-1473.
DeLaney K, Buchberger AR, Atkinson L, Grunder S, Mousley A, Li LJ. New techniques, applications and perspectives in neuropeptide research. Journal of Experimental Biology. 2018 ;221.
Cao QJW, Ouyang CZ, Zhong XF, Li LJ. Profiling of small molecule metabolites and neurotransmitters in crustacean hemolymph and neuronal tissues using reversed-phase LC-MS/MS. Electrophoresis. 2018 ;39:1241-1248.
Chen BM, Feng Y, Frost DC, Zhong XF, Buchberger AR, Johnson J, Xu M, Kim M, Puccetti D, Diamond C, et al. Quantitative Glycomic Analysis by Mass-Defect-Based Dimethyl Pyrimidinyl Ornithine (DiPyrO) Tags and High -Resolution Mass. Analytical Chemistry. 2018 ;90:7817-7823.
Stallcop LE, Alvarez-Garcia YR, Reyes-Ramos AM, Ramos-Cruz KP, Morgan MM, Shi YT, Li LJ, Beebe DJ, Domenech M, Warrick JW. Razor-printed sticker microdevices for cell-based applications. Lab on a Chip. 2018 ;18:451-462.
Chen ZW, Glover MS, Li LJ. Recent advances in ion mobility-mass spectrometry for improved structural characterization of glycans and glycoconjugates. Current Opinion in Chemical Biology. 2018 ;42:1-8.
Jiang XY, Xiang F, Jia CX, Buchberger AR, Li LJ. Relative Quantitation of Neuropeptides at Multiple Developmental Stages of the American Lobster Using N,N-Dimethyl Leucine Isobaric Tandem Mass Tags. ACS Chemical Neuroscience. 2018 ;9:2054-2063.
Han SL, Lv YN, Kong LY, Sun YM, Fu J, Li LJ, He LC. Simultaneous identification of the anaphylactoid components from traditional Chinese medicine injections using rat basophilic leukemia 2H3 and laboratory of allergic disease 2 dual-mixed/cell membrane chromatography model. Electrophoresis. 2018 ;39:1181-1189.
Chen ZW, Yu Q, Hao L, Liu FB, Johnson J, Tian ZC, Kao WJ, Xu W, Li LJ. Site-specific characterization and quantitation of N-glycopeptides in PKM2 knockout breast cancer cells using DiLeu isobaric tags enabled by electron-transfer/higher-energy collision dissociation (EThcD). Analyst. 2018 ;143:2508-2519.
Ma FF, Liu FB, Xu W, Li LJ. Surfactant and Chaotropic Agent Assisted Sequential Extraction/On-Pellet Digestion (SCAD) for Enhanced Proteomics. Journal of Proteome Research. 2018 ;17:2744-2754.
Chen BM, Zhong XF, Feng Y, Snovida S, Xu M, Rogers J, Li LJ. Targeted MultiNotch MS3 Approach for Relative Quantification of N-Glycans Using Multiplexed Carbonyl-Reactive Isobaric Tags. Analytical Chemistry. 2018 ;90:1129-1135.
Sibilska I, Feng Y, Li LJ, Yin J. Trimetaphosphate Activates Prebiotic Peptide Synthesis across a Wide Range of Temperature and pH. Origins of Life and Evolution of Biospheres. 2018 ;48:277-287.

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